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REL: Connectome Mapper Release v3.0.0 #80
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…arcellation stages
…sting cmp derivatives for custom inputs
… and fmri pipelines
… pipelines to handle custom anatomical inputs
…tom_parcellation for diffusion and fmri pipelines
…unctional connectivity maps
…segmentation and parcellation inputs
…n, functionalMRI and fmri_preprocessing stages
…ntation and parcellation inputs
…ustom inputs used
…iant with BIDS 1.4.0+ (e.g. <tool>-<version>)
…e of send_codecov_report and review job dependencies in the workflow
…sist_to_workspace
…d following BIDS Merge pull request #88 from sebastientourbier/enh/release/v3.0.0/custom_anatomical
Codecov Report
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…peline config file (address #100) [skip ci]
Dedicated to the development of release v3.0.0, that includes in particular:
New features
Ability to use custom segmentation and parcellation ENH: Add capability for custom segmentation and parcellation formatted following BIDS #88
Generate generic label-index mapping tsv files along with the parcellation files, in accordance to BIDS derivatives.
Add commandline interfaces that generate the docker and singularity images ENH: add singularity CLI to wrap calls to the Singularity BIDS APP image #109 ENH: add docker CLI to wrap calls to the Docker BIDS APP image #115 ENH: Python wrapper for docker run command #112 ENH: Python wrapper for singularity run command. #113 FIX: Adjust the implementation of the python wrappers #130
Build the docker image with multiple stage builds and BUILDKIT to speedup the process ENH: Add capability for custom segmentation and parcellation formatted following BIDS #88
Major change
(commit b25e0fa)
Improvements
Improve error message in the GUI Enh/release/v3.0.0/enhanced bidsappman messages #114
Rename directories for the derivatives produced by cmp (
cmp
,freesurfer
,nipype
) tocmp-<version>
,freesurfer-<version>
, andnipype-<version>
to comply with BIDS 1.4.0+.Continuous integration
and a few more...
Please check the documentation changelog for a full list of changes.